PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G102900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 310aa    MW: 34519.6 Da    PI: 7.3656
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G102900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.5e-19231264134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Prupe.6G102900.1.p 231 CMHCAVTKTPQWREGPLGPKTLCNACGVRYRSGR 264
                         99*****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-15225275IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.057225261IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15227288No hitNo description
Gene3DG3DSA:3.30.50.108.0E-14229262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-15230277No hitNo description
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
PfamPF003207.7E-17231264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTAVSADVTK LTKRENISAM ASSMPTDDNF NIESFLPDEL KALDFPMEDI EECVEDEDWY  60
AQFQNLEPPS FEDLFCPRVL DGNDDMKPKN LSTSYGQTSQ RNQLPRTAAK TTRGISSIHS  120
EDLESIGSCA AQFEPKFEKR TRSKLSRSKR SSPAIFNTQF FPSTSSNSSA SENLYHWDAS  180
ESDLEGSLTE EMSNAAKRKQ KKKRNLSQLS SAEMRKLSTE EPGESRETKR CMHCAVTKTP  240
QWREGPLGPK TLCNACGVRY RSGRLFPEYR PAASPTFVAS VHSNSHKKVI ELRNKGCQGA  300
TMGILSSAQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245237.10.0PREDICTED: GATA transcription factor 11-like isoform X1
TrEMBLM5VZX11e-154M5VZX1_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-38GATA family protein